
To implement the decree of Pope Pius XI, mandating that seminaries should be exclusively for students aspiring for the priesthood, the
Seminario-Colegio became two separate institutions in 1924, a Colegio for the extern students and a Seminario for those in priestly training. In 1932 the
Colegio de San Carlos moved to a new place in the city (P. del Rosario Street) while the
Seminario de San Carlos remained in its original location near the Plaza Independencia. In 1934 the
Padres Paules turned over the administration of the Colegio de San Carlos to the Fathers of the Society of the Divine Word (SVD).


The outbreak of the Second World War forced the seminary to close, although in June of 1943 classes were to resume in the parish convent of Argao for the
menores or those in high school and in a rented house in Sibonga for the
mayores or those in Philosophy and Theology. When the heavy aerial bombing during the liberation of Cebu in 1945 completely destroyed the seminary building, Archbishop Gabriel Reyes rallied the people of Cebu for the construction of a new building in Mabolo. In 1949 the seminarians and priests moved in to the new site.

The increase in vocations to the priesthood paved the way for the separation of the High School seminarians in 1952 and those in Philosophy in 1971 from the Theology level. The
Seminario Menor de San Carlos
was renamed Pope John XXIII Minor Seminary when the Padres Paules turned it over to the diocesan clergy on July 14, 1969, while the Philosophy department became San Carlos Seminary College in 1973. The Theology department became Seminario Mayor de San Carlos.

The Seminario Mayor continued to be administered by the Spanish Padres Paules until 1973 when Fr. Jesus Dosado, C.M., the first Filipino Rector was appointed. Succeeded by Cristeto Mendez (1977-80), Jaime Belita (1980-

83), Rafael Sucaldito (1983-86) and Manuel Ginete (1986-1998), the Filipino Vincentians implemented the reforms of the Second Vatican
Council on priestly formation. The school year 1985-86 saw the start of the intensive one-year Spiritual Pastoral Formation Year (SPFY) Program. Bishops of suffragan dioceses started sending some of their priests to be formators and/or professors while competent lay people were carefully selected to help prepare future priests. In 1996 the Graduate Programs in Theology and Pastoral Ministry for priests and lay gained government recognition.
The seminary entered into a new chapter of its history when on March 21, 1998 the Congregation of the Mission officially turned over the administration of the seminary to the Archbishop of Cebu, His Eminence Ricardo J. Cardinal Vidal.